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Chemistry

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Also known as: 1141397-80-9, Cedazuridine [inn], Cedazuridine [usan], 39is23q1ew, Chembl3237547, E7727
Molecular Formula
C9H14F2N2O5
Molecular Weight
268.21  g/mol
InChI Key
VUDZSIYXZUYWSC-DBRKOABJSA-N
FDA UNII
39IS23Q1EW

Cedazuridine
Cedazuridine is an orally available synthetic nucleoside analog derived from tetrahydrouridine (THU) and cytidine deaminase inhibitor (CDAi), that can potentially be used to prevent the breakdown of cytidines. Upon oral administration, cedazuridine binds to and inhibits CDA, an enzyme primarily found in the gastrointestinal (GI) tract and liver that catalyzes the deamination of cytidine and cytidine analogs. Given in combination with a cytidine, such as the antineoplastic hypomethylating agent decitabine, it specifically prevents its breakdown and increases its bioavailability and efficacy. In addition, this allows for lower doses of decitabine to be administered, which results in decreased decitabine-associated GI toxicity.
1 2D Structure

Cedazuridine

2 Identification
2.1 Computed Descriptors
2.1.1 IUPAC Name
(4R)-1-[(2R,4R,5R)-3,3-difluoro-4-hydroxy-5-(hydroxymethyl)oxolan-2-yl]-4-hydroxy-1,3-diazinan-2-one
2.1.2 InChI
InChI=1S/C9H14F2N2O5/c10-9(11)6(16)4(3-14)18-7(9)13-2-1-5(15)12-8(13)17/h4-7,14-16H,1-3H2,(H,12,17)/t4-,5-,6-,7-/m1/s1
2.1.3 InChI Key
VUDZSIYXZUYWSC-DBRKOABJSA-N
2.1.4 Canonical SMILES
C1CN(C(=O)NC1O)C2C(C(C(O2)CO)O)(F)F
2.1.5 Isomeric SMILES
C1CN(C(=O)N[C@@H]1O)[C@H]2C([C@@H]([C@H](O2)CO)O)(F)F
2.2 Other Identifiers
2.2.1 UNII
39IS23Q1EW
2.3 Synonyms
2.3.1 MeSH Synonyms

1. (4r)-2'-deoxy-2',2'-difluoro-3,4,5,6-tetrahydrouridine

2.3.2 Depositor-Supplied Synonyms

1. 1141397-80-9

2. Cedazuridine [inn]

3. Cedazuridine [usan]

4. 39is23q1ew

5. Chembl3237547

6. E7727

7. Astx727 Component Cedazuridine

8. Astx-727 Component Cedazuridine

9. (4r)-2'-deoxy-2',2'-difluoro-3,4,5,6-tetrahydrouridine

10. E-7727

11. (4r)-1-[(2r,4r,5r)-3,3-difluoro-4-hydroxy-5-(hydroxymethyl)oxolan-2-yl]-4-hydroxy-1,3-diazinan-2-one

12. Uridine, 2'-deoxy-2',2'-difluoro-3,4,5,6-tetrahydro-, (4r)-

13. (r)-1-((2r,4r,5r)-3,3-difluoro-4-hydroxy-5-(hydroxymethyl)tetrahydrofuran-2-yl)-4-hydroxytetrahydropyrimidin-2(1h)-one

14. Cedazuridine [usan:inn]

15. Unii-39is23q1ew

16. Cedazuridine [who-dd]

17. Schembl172256

18. Gtpl11101

19. Cedazuridine [orange Book]

20. Ex-a5549

21. Inqovi Component Cedazuridine

22. Bdbm50007029

23. Who 10741

24. Astx727 (cedazuridine + Decitabine)

25. At22227

26. Cedazuridine Component Of Inqovi

27. Compound 7a [pmid: 24520856]

28. A937507

29. (4r)-4-hydroxy-1-(2,2-difluoro-2-deoxy-beta-d-ribofuranosyl)-3,4,5,6-tetrahydropyrimidine-2(1h)-one

2.4 Create Date
2009-05-25
3 Chemical and Physical Properties
Molecular Weight 268.21 g/mol
Molecular Formula C9H14F2N2O5
XLogP3-1.1
Hydrogen Bond Donor Count4
Hydrogen Bond Acceptor Count7
Rotatable Bond Count2
Exact Mass268.08707788 g/mol
Monoisotopic Mass268.08707788 g/mol
Topological Polar Surface Area102 Ų
Heavy Atom Count18
Formal Charge0
Complexity343
Isotope Atom Count0
Defined Atom Stereocenter Count4
Undefined Atom Stereocenter Count0
Defined Bond Stereocenter Count0
Undefined Bond Stereocenter Count0
Covalently Bonded Unit Count1
4 Drug and Medication Information
4.1 Drug Indication

Cedazuridine, in combination with decitabine, is indicated for the treatment of myelodysplastic syndromes (MDS), including MDS with refractory anemia, MDS with refractory anemia and ringed sideroblasts, MDS with refractory anemia and excess blasts, MDS scoring intermediate-1, intermediate-2, or high-risk on the International Prognostic Scoring System (IPSS), and chronic myelomonocytic leukemia (CMML).


5 Pharmacology and Biochemistry
5.1 Pharmacology

Cedazuridine is a cytidine deaminase inhibitor that is co-administered with hypomethylating agents such as [decitabine] in order to increase their oral bioavailability. In combination with hypomethylating agents, cedazuridine may cause myelosuppression and embryo-fetal toxicity and should be administered with appropriate monitoring.


5.2 Absorption, Distribution and Excretion

Absorption

Cedazuridine (100 mg) taken orally with [decitabine] (35 mg) once daily for five days resulted in a day 1 AUC and steady-state AUC (coefficient of variation) of 103 (55%) and 178 (53%) ng\*hr/mL for [decitabine] and 2950 (49%) and 3291 (45%) ng\*hr/mL for cedazuridine, respectively. Overall, the 5-day cumulative AUC for [decitabine] was 851 (50%). Similarly, the Cmax for [decitabine] and cedazuridine was 145 (55%) and 371 (52%) ng/mL, respectively. The median Tmax for [decitabine] was 1 hr (range 0.3 to 3.0 hrs) and for cedazuridine was 3 hrs (range 1.5 to 6.1 hrs). The bioavailability of [decitabine], as assessed by comparing the AUC of oral [decitabine] co-administered with cedazuridine to intravenous [decitabine] alone, was 60% on day 1 (90% CI of 55-65%). The corresponding values on day 5 and considering the cumulative day 5 dose were 106% (90% CI: 98, 114) and 99% (90% CI: 93, 106). Hence, the oral bioavailability of [decitabine] approaches 100% over the 5-day treatment cycle.


Route of Elimination

Roughly 46% of cedazuridine is found in urine, 21% of which is unchanged, and 51% is found in feces, 27% of which is unchanged.


Volume of Distribution

The apparent volume of distribution (and coefficient of variation) of [decitabine] and cedazuridine at steady state was 417 (54%) and 296 (51%), respectively.


Clearance

Cedazuridine has an apparent steady-state clearance of 30.3 L/hours, with a coefficient of variation of 46%.


5.3 Metabolism/Metabolites

The metabolism of cedazuridine is not well-established. Cedazuridine is known to be converted to an epimer that is roughly 10-fold less effective in inhibiting cytidine deaminase and is subsequently degraded through unknown pathways.


5.4 Biological Half-Life

Cedazuridine has a steady-state half-life of 6.7 hours, with a coefficient of variation of 19%.


5.5 Mechanism of Action

Myelodysplastic syndromes (MDS) represent a heterogeneous group of hematopoietic neoplasms arising from a variety of underlying mutations that manifest in peripheral cytopenias and may eventually progress to secondary acute myeloid leukemia (sAML). There are over 45 genes commonly mutated in MDS patients, including those involved in DNA methylation and repair, histone modification, RNA splicing, transcription, signal transduction, and cellular adhesion. It is hypothesized that initial clonal founder mutations give rise to progressive acquisition of secondary mutations and facilitate disease progression to sAML. Hypomethylating agents such as [decitabine] are metabolized into triphosphate derivatives that are subsequently incorporated into DNA. Once incorporated, these agents inhibit the activity of DNA methylases such as DNMT1, leading to progressive DNA hypomethylation and eventual activation of tumour suppression genes and apoptotic pathways. However, hypomethylating agents given orally are vulnerable to first-pass metabolism by cytidine deaminase, and hence typically have to be administered through intramuscular or intravenous routes. Co-administration with cedazuridine, which is an efficient inhibitor of cytidine deaminase, drastically increases the oral bioavailability of [decitabine], allowing for combination oral therapy.


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