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Chemistry

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Also known as: Yondelis, Ecteinascidin, Ecteinascidin 743, Et-743, 114899-77-3, Ect 743
Molecular Formula
C39H43N3O11S
Molecular Weight
761.8  g/mol
InChI Key
PKVRCIRHQMSYJX-AIFWHQITSA-N
FDA UNII
ID0YZQ2TCP

Trabectedin
A complex structure that includes isoquinolines joined by a cyclic ester; it is a DNA-binding agent and guanine N2 alkylator derived from the marine tunicate, Ecteinascidia turbinata. Trabectedin is used for the treatment of advanced soft-tissue SARCOMA, after failure of ANTHRACYCLINES or IFOSFAMIDE drug therapy.
Trabectedin is an Alkylating Drug. The mechanism of action of trabectedin is as an Alkylating Activity.
1 2D Structure

Trabectedin

2 Identification
2.1 Computed Descriptors
2.1.1 IUPAC Name
[(1R,2R,3R,11S,12S,14R,26R)-5,6',12-trihydroxy-6,7'-dimethoxy-7,21,30-trimethyl-27-oxospiro[17,19,28-trioxa-24-thia-13,30-diazaheptacyclo[12.9.6.13,11.02,13.04,9.015,23.016,20]triaconta-4(9),5,7,15,20,22-hexaene-26,1'-3,4-dihydro-2H-isoquinoline]-22-yl] acetate
2.1.2 InChI
InChI=1S/C39H43N3O11S/c1-16-9-20-10-22-37(46)42-23-13-50-38(47)39(21-12-25(48-5)24(44)11-19(21)7-8-40-39)14-54-36(30(42)29(41(22)4)26(20)31(45)32(16)49-6)28-27(23)35-34(51-15-52-35)17(2)33(28)53-18(3)43/h9,11-12,22-23,29-30,36-37,40,44-46H,7-8,10,13-15H2,1-6H3/t22-,23-,29+,30+,36+,37-,39+/m0/s1
2.1.3 InChI Key
PKVRCIRHQMSYJX-AIFWHQITSA-N
2.1.4 Canonical SMILES
CC1=CC2=C(C3C4C5C6=C(C(=C7C(=C6C(N4C(C(C2)N3C)O)COC(=O)C8(CS5)C9=CC(=C(C=C9CCN8)O)OC)OCO7)C)OC(=O)C)C(=C1OC)O
2.1.5 Isomeric SMILES
CC1=CC2=C([C@@H]3[C@@H]4[C@H]5C6=C(C(=C7C(=C6[C@@H](N4[C@H]([C@H](C2)N3C)O)COC(=O)[C@@]8(CS5)C9=CC(=C(C=C9CCN8)O)OC)OCO7)C)OC(=O)C)C(=C1OC)O
2.2 Other Identifiers
2.2.1 UNII
ID0YZQ2TCP
2.3 Synonyms
2.3.1 MeSH Synonyms

1. Ecteinascidin 743

2. Et 743

3. Et-743

4. Et743

5. Nsc 684766

6. Yondelis

2.3.2 Depositor-Supplied Synonyms

1. Yondelis

2. Ecteinascidin

3. Ecteinascidin 743

4. Et-743

5. 114899-77-3

6. Ect 743

7. Et743

8. Id0yzq2tcp

9. Et 743

10. Ecteinascidins Trabectedin

11. Chebi:84050

12. Nsc-648766

13. [(1r,2r,3r,11s,12s,14r,26r)-5,6',12-trihydroxy-6,7'-dimethoxy-7,21,30-trimethyl-27-oxospiro[17,19,28-trioxa-24-thia-13,30-diazaheptacyclo[12.9.6.13,11.02,13.04,9.015,23.016,20]triaconta-4(9),5,7,15,20,22-hexaene-26,1'-3,4-dihydro-2h-isoquinoline]-22-yl] Acetate

14. Dsstox_cid_26880

15. Dsstox_rid_81984

16. Dsstox_gsid_46880

17. Trabectedin [inn]

18. Ecteinascidine 743

19. Ecteinascidin-743

20. Cas-114899-77-3

21. Unii-id0yzq2tcp

22. Nsc 648766

23. Nsc 684766

24. Trabectedin [usan:inn:ban]

25. Ccris 8133

26. Ncgc00181159-01

27. Ncgc00181159-02

28. Trabectedin [jan]

29. Trabectedin [usan]

30. Trabectedin [mart.]

31. Trabectedin [who-dd]

32. Trabectedin [ema Epar]

33. Chembl450449

34. Gtpl2774

35. Dtxsid2046880

36. Schembl12119916

37. Trabectedin [orange Book]

38. Ex-a4317

39. Tox21_112762

40. Tox21_113236

41. Nsc813783

42. Zinc150338708

43. Cs-1608

44. Db05109

45. Ecteinascidins Trabectedin [mi]

46. Nsc-684766

47. Nsc-813783

48. (1'r,6r,6ar,7r,13s,14s,16r)-6',8,14-trihydroxy-7',9-dimethoxy-4,10,23-trimethyl-19-oxo-3',4',6,7,12,13,14,16-octahydrospiro(6,16-(epithiopropanooxymethano)-7,13-imino-6ah-1,3-dioxolo(7,8)isoquino(3,2-b)(3)benzazocine-20,1'(2'h)-isoquinolin)-5-yl Acetate

49. Ac-27767

50. Ecteinascidin 743;et-743;ecteinascidin

51. Hy-50936

52. Spiro(6,16-(epithiopropanoxymethano)-7,13-imino-12h-1,3-dioxolo(7,8)isoquino(3,2,-b)(3)benzazocine-20,1'(2'h)-isoquinolin)-19-one, 3',4',6,6a,7,13,14,16-octahydro-5-(acetyloxy)-6',8,14-trihydroxy-7',9-dimethoxy-4,10,23-trimethyl-, (6r-(6-alpha,6a-beta,7-beta,13-beta,14-beta,16-alpha,20r*))-

53. Spiro(6,16-(epithiopropanoxymethano)-7,13-imino-12h-1,3-dioxolo(7,8)isoquino(3,2,-b)(3)benzazocine-20,1'(2'h)-isoquinolin)-19-one, 5-(acetyloxy)-3',4',6,6a,7,13,14,16-octahydro-6',8,14-trihydroxy-7',9-dimethoxy-4,10,23-trimethyl-, (1'r,6r,6ar,7r,13s,14s,16r)-

54. Q2637746

55. (1r,2r,3r,11s,12s,14r,26r)-5,6',12-trihydroxy-6,7'-dimethoxy-7,21,30-trimethyl-27-oxo-3',4'-dihydro-2'h-17,19,28-trioxa-24-thia-13,30-diazaspiro[heptacyclo[12.9.6.1^{3,11}.0^{2,13}.0^{4,9}.0^{15,23}.0^{16,20}]triacontane-26,1'-isoquinoline]-4(9),5,7,15(23),16(20),21-hexaen-22-yl Acetate

56. (6r,6ar,7r,13s,14s,16r,20r)-6',8,14-trihydroxy-7',9-dimethoxy-4,10,23-trimethyl-19-oxo-3',4',6,7,12,13,14,16-octahydro-2'h,6ah-spiro[7,13-epimino-6,16-(epithiopropanooxymethano)[1,3]dioxolo[7,8]isoquinolino[3,2-b][3]benzazocine-20,1'-isoquinolin]-5-yl Acetate

2.4 Create Date
2005-08-08
3 Chemical and Physical Properties
Molecular Weight 761.8 g/mol
Molecular Formula C39H43N3O11S
XLogP33.4
Hydrogen Bond Donor Count4
Hydrogen Bond Acceptor Count15
Rotatable Bond Count4
Exact Mass761.26183037 g/mol
Monoisotopic Mass761.26183037 g/mol
Topological Polar Surface Area194 Ų
Heavy Atom Count54
Formal Charge0
Complexity1450
Isotope Atom Count0
Defined Atom Stereocenter Count7
Undefined Atom Stereocenter Count0
Defined Bond Stereocenter Count0
Undefined Bond Stereocenter Count0
Covalently Bonded Unit Count1
4 Drug and Medication Information
4.1 Drug Indication

Indicated for treatment of advanced soft tissue sarcoma in patients refractory to or unsuitable to receive anthracycline or ifosfamide chemotherapy in Europe, Russia and South Korea. Approved for orphan drug status by the U.S. FDA for treatment of soft tissue sarcomas and ovarian cancer. Investigated for use/treatment in cancer/tumors (unspecified), gastric cancer, ovarian cancer, pediatric indications, sarcoma, and solid tumors.


FDA Label


Yondelis is indicated for the treatment of patients with advanced soft-tissue sarcoma, after failure of anthracyclines and ifosfamide, or who are unsuited to receive these agents. Efficacy data are based mainly on liposarcoma and leiomyosarcoma patients.

Yondelis in combination with pegylated liposomal doxorubicin (PLD) is indicated for the treatment of patients with relapsed platinum-sensitive ovarian cancer .


Yondelis is indicated for the treatment of patients with advanced soft tissue sarcoma, having failed antracyclines and ifosfamide, or having failed ifosfamide and unsuitable to receive antracyclines/ifosfamide.


5 Pharmacology and Biochemistry
5.1 Pharmacology

Two of the rings in the drug's structure allows it to covalently bind to the minor groove of DNA. The third ring protrudes from the DNA which lets it interact with nearby nuclear proteins. This has the additive effect of blocking cell division at the G2 phase.


5.2 MeSH Pharmacological Classification

Antineoplastic Agents, Alkylating

A class of drugs that differs from other alkylating agents used clinically in that they are monofunctional and thus unable to cross-link cellular macromolecules. Among their common properties are a requirement for metabolic activation to intermediates with antitumor efficacy and the presence in their chemical structures of N-methyl groups, that after metabolism, can covalently modify cellular DNA. The precise mechanisms by which each of these drugs acts to kill tumor cells are not completely understood. (From AMA, Drug Evaluations Annual, 1994, p2026) (See all compounds classified as Antineoplastic Agents, Alkylating.)


5.3 FDA Pharmacological Classification
5.3.1 Active Moiety
TRABECTEDIN
5.3.2 FDA UNII
ID0YZQ2TCP
5.3.3 Pharmacological Classes
Alkylating Drug [EPC]; Alkylating Activity [MoA]
5.4 ATC Code

L01CX01


L01CX01


L01CX01

S76 | LUXPHARMA | Pharmaceuticals Marketed in Luxembourg | Pharmaceuticals marketed in Luxembourg, as published by d'Gesondheetskeess (CNS, la caisse nationale de sante, www.cns.lu), mapped by name to structures using CompTox by R. Singh et al. (in prep.). List downloaded from https://cns.public.lu/en/legislations/textes-coordonnes/liste-med-comm.html. Dataset DOI:10.5281/zenodo.4587355


L - Antineoplastic and immunomodulating agents

L01 - Antineoplastic agents

L01C - Plant alkaloids and other natural products

L01CX - Other plant alkaloids and natural products

L01CX01 - Trabectedin


5.5 Absorption, Distribution and Excretion

Absorption

Administered intravenously.


5.6 Biological Half-Life

33-50 hours


5.7 Mechanism of Action

Trabectedin interacts with the minor groove of DNA and alkylates guanine at the N2 position, which bends towards the major groove. In this manner, it is thought that the drug affects various transcription factors involved in cell proliferation, particularly via the transcription-coupled nucleotide excision repair system. Trabectedin blocks the cell cycle at the G2 phase, while cells at the G1 phase are most sensitive to the drug. It also inhibits overexpression of the multidrug resistance-1 gene (MDR-1) coding for the P-glycoprotein that is a major factor responsible for cells developing resistance to cancer drugs. The agent is also thought to interfere with the nucleotide excision repair pathways of cancer cells, suggesting that it could be effective in the treatment of many cancer types including melanoma and sarcoma, as well as lung, breast, ovarian, endometrial and prostate cancers; clinical evaluations are underway in these indications.


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ABOUT THIS PAGE

Trabectedin Manufacturers

A Trabectedin manufacturer is defined as any person or entity involved in the manufacture, preparation, processing, compounding or propagation of Trabectedin, including repackagers and relabelers. The FDA regulates Trabectedin manufacturers to ensure that their products comply with relevant laws and regulations and are safe and effective to use. Trabectedin API Manufacturers are required to adhere to Good Manufacturing Practices (GMP) to ensure that their products are consistently manufactured to meet established quality criteria.

click here to find a list of Trabectedin manufacturers with USDMF, JDMF, KDMF, CEP, GMP, COA and API Price related information on PhamaCompass.

Trabectedin Suppliers

A Trabectedin supplier is an individual or a company that provides Trabectedin active pharmaceutical ingredient (API) or Trabectedin finished formulations upon request. The Trabectedin suppliers may include Trabectedin API manufacturers, exporters, distributors and traders.

click here to find a list of Trabectedin suppliers with USDMF, JDMF, KDMF, CEP, GMP, COA and API Price related information on PharmaCompass.

Trabectedin USDMF

A Trabectedin DMF (Drug Master File) is a document detailing the whole manufacturing process of Trabectedin active pharmaceutical ingredient (API) in detail. Different forms of Trabectedin DMFs exist exist since differing nations have different regulations, such as Trabectedin USDMF, ASMF (EDMF), JDMF, CDMF, etc.

A Trabectedin DMF submitted to regulatory agencies in the US is known as a USDMF. Trabectedin USDMF includes data on Trabectedin's chemical properties, information on the facilities and procedures used, and details about packaging and storage. The Trabectedin USDMF is kept confidential to protect the manufacturer’s intellectual property.

click here to find a list of Trabectedin suppliers with USDMF on PharmaCompass.

Trabectedin JDMF

The Pharmaceuticals and Medical Devices Agency (PMDA) established the Japan Drug Master File (JDMF), also known as the Master File (MF), to permit Japanese and foreign manufacturers of drug substances, intermediates, excipients, raw materials, and packaging materials (‘Products’) to voluntarily register confidential information about the production and management of their products in Japan.

The Trabectedin Drug Master File in Japan (Trabectedin JDMF) empowers Trabectedin API manufacturers to present comprehensive information (e.g., production methods, data, etc.) to the review authority, i.e., PMDA (Pharmaceuticals & Medical Devices Agency).

PMDA reviews the Trabectedin JDMF during the approval evaluation for pharmaceutical products. At the time of Trabectedin JDMF registration, PMDA checks if the format is accurate, if the necessary items have been included (application), and if data has been attached.

click here to find a list of Trabectedin suppliers with JDMF on PharmaCompass.

Trabectedin KDMF

In Korea, the Ministry of Food and Drug Safety (MFDS) is in charge of regulating pharmaceutical products and services.

Pharmaceutical companies submit a Trabectedin Drug Master File in Korea (Trabectedin KDMF) to the MFDS, which includes comprehensive information about the production, processing, facilities, materials, packaging, and testing of Trabectedin. The MFDS reviews the Trabectedin KDMF as part of the drug registration process and uses the information provided in the Trabectedin KDMF to evaluate the safety and efficacy of the drug.

After submitting a Trabectedin KDMF to the MFDS, the registered manufacturer can provide importers or distributors with the registration number without revealing confidential information to Korean business partners. Applicants seeking to register their Trabectedin API can apply through the Korea Drug Master File (KDMF).

click here to find a list of Trabectedin suppliers with KDMF on PharmaCompass.

Trabectedin WC

A Trabectedin written confirmation (Trabectedin WC) is an official document issued by a regulatory agency to a Trabectedin manufacturer, verifying that the manufacturing facility of a Trabectedin active pharmaceutical ingredient (API) adheres to the Good Manufacturing Practices (GMP) regulations of the importing country. When exporting Trabectedin APIs or Trabectedin finished pharmaceutical products to another nation, regulatory agencies frequently require a Trabectedin WC (written confirmation) as part of the regulatory process.

click here to find a list of Trabectedin suppliers with Written Confirmation (WC) on PharmaCompass.

Trabectedin NDC

National Drug Code is a comprehensive database maintained by the FDA that contains information on all drugs marketed in the US. This directory includes information about finished drug products, unfinished drug products, and compounded drug products, including those containing Trabectedin as an active pharmaceutical ingredient (API).

Finished drug products

The FDA updates the NDC directory daily. The NDC numbers for Trabectedin API and other APIs are published in this directory by the FDA.

Unfinished drugs

The NDC unfinished drugs database includes product listing information submitted for all unfinished drugs, such as active pharmaceutical ingredients (APIs), drugs intended for further processing and bulk drug substances for compounding.

Pharmaceutical companies that manufacture Trabectedin as an active pharmaceutical ingredient (API) must furnish the FDA with an updated record of all drugs that they produce, prepare, propagate, compound, or process for commercial distribution in the US at their facilities.

Compounded drug products

The NDC directory also contains data on finished compounded human drug products that contain Trabectedin and are produced by outsourcing facilities. While these outsourcing facilities are not mandated to assign a Trabectedin NDC to their finished compounded human drug products, they may choose to do so.

click here to find a list of Trabectedin suppliers with NDC on PharmaCompass.

Trabectedin GMP

Trabectedin Active pharmaceutical ingredient (API) is produced in GMP-certified manufacturing facility.

GMP stands for Good Manufacturing Practices, which is a system used in the pharmaceutical industry to make sure that goods are regularly produced and monitored in accordance with quality standards. The FDA’s current Good Manufacturing Practices requirements are referred to as cGMP or current GMP which indicates that the company follows the most recent GMP specifications. The World Health Organization (WHO) has its own set of GMP guidelines, called the WHO GMP. Different countries can also set their own guidelines for GMP like China (Chinese GMP) or the EU (EU GMP).

PharmaCompass offers a list of Trabectedin GMP manufacturers, exporters & distributors, which can be sorted by USDMF, JDMF, KDMF, CEP (COS), WC, API price, and more, enabling you to easily find the right Trabectedin GMP manufacturer or Trabectedin GMP API supplier for your needs.

Trabectedin CoA

A Trabectedin CoA (Certificate of Analysis) is a formal document that attests to Trabectedin's compliance with Trabectedin specifications and serves as a tool for batch-level quality control.

Trabectedin CoA mostly includes findings from lab analyses of a specific batch. For each Trabectedin CoA document that a company creates, the USFDA specifies specific requirements, such as supplier information, material identification, transportation data, evidence of conformity and signature data.

Trabectedin may be tested according to a variety of international standards, such as European Pharmacopoeia (Trabectedin EP), Trabectedin JP (Japanese Pharmacopeia) and the US Pharmacopoeia (Trabectedin USP).

Inform the supplier about your product requirements, specifying if you need a product with particular monograph like EP (Ph. Eur.), USP, JP, BP, or any other quality. In addition, clarify whether you need hydrochloride (HCl), anhydricum, base, micronisatum or a specific level of purity. To find reputable suppliers, utilize the filters and select those certified by GMP, FDA, or any other certification as per your requirement.
For your convenience, we have listed synonyms and CAS numbers to help you find the best supplier. The use of synonyms and CAS numbers can be helpful in identifying potential suppliers, but it is crucial to note that they might not always indicate the exact same product. It is important to confirm the product details with the supplier before making a purchase to ensure that it meets your requirements.
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