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Technical details about Aspacytarabine, learn more about the structure, uses, toxicity, action, side effects and more

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2D Structure
1. Also known as: Aspacytarabine, Aspacytarabine [inn], Bst-236, Aspacytarabine [usan], Jl7v54z2br, 2098942-53-9
Molecular Formula
C13H18N4O8
Molecular Weight
358.30  g/mol
InChI Key
PVPJTBAEAQVTPN-HRAQMCAYSA-N
FDA UNII
JL7V54Z2BR

Aspacytarabine is a small molecule pro-drug consisting of cytarabine, an antimetabolite analog of cytidine with a modified arabinose sugar moiety, covalently bonded to asparagine, with potential antineoplastic activity. Upon intravenous administration, aspacytarabine targets cancer cells, which often lack asparagine synthetase and are dependent on an external source of amino acids due to their high metabolic rate. Once the prodrug is inside target cells, the cytarabine component is cleaved and competes with cytidine for incorporation into DNA. The arabinose sugar moiety of cytarabine sterically hinders the rotation of the molecule within DNA, resulting in cell cycle arrest, specifically during the S phase of replication. Cytarabine also inhibits DNA polymerase, resulting in a decrease in DNA replication and repair. Because BST-236 specifically targets cancer cells, it may spare normal tissues from cytarabine-related toxicities.
1 2D Structure

2D Structure

2 Identification
2.1 Computed Descriptors
2.1.1 IUPAC Name
(2S)-2-amino-4-[[1-[(2R,3S,4S,5R)-3,4-dihydroxy-5-(hydroxymethyl)oxolan-2-yl]-2-oxopyrimidin-4-yl]amino]-4-oxobutanoic acid
2.1.2 InChI
InChI=1S/C13H18N4O8/c14-5(12(22)23)3-8(19)15-7-1-2-17(13(24)16-7)11-10(21)9(20)6(4-18)25-11/h1-2,5-6,9-11,18,20-21H,3-4,14H2,(H,22,23)(H,15,16,19,24)/t5-,6+,9+,10-,11+/m0/s1
2.1.3 InChI Key
PVPJTBAEAQVTPN-HRAQMCAYSA-N
2.1.4 Canonical SMILES
C1=CN(C(=O)N=C1NC(=O)CC(C(=O)O)N)C2C(C(C(O2)CO)O)O
2.1.5 Isomeric SMILES
C1=CN(C(=O)N=C1NC(=O)C[C@@H](C(=O)O)N)[C@H]2[C@H]([C@@H]([C@H](O2)CO)O)O
2.2 Other Identifiers
2.2.1 UNII
JL7V54Z2BR
2.3 Synonyms
2.3.1 Depositor-Supplied Synonyms

1. Aspacytarabine

2. Aspacytarabine [inn]

3. Bst-236

4. Aspacytarabine [usan]

5. Jl7v54z2br

6. 2098942-53-9

7. Unii-jl7v54z2br

8. Aspacytarabine [who-dd]

9. Chembl4297599

10. Who 10941

11. L-asparagine, N-(1-.beta.-d-arabinofuranosyl-1,2-dihydro-2-oxo-4-pyrimidinyl)-

12. L-asparagine, N-(1-beta-d-arabinofuranosyl-1,2-dihydro-2-oxo-4-pyrimidinyl)-

13. N4-(1-.beta.-d-arabinofuranosyl-2-oxo-1,2-dihydropyrimidin-4-yl)-l-asparagine

14. N4-(1-n2-d-arabinofuranosyl-2-oxo-1,2-dihydropyrimidin-4-yl)- L-asparagine

2.4 Create Date
2018-12-16
3 Chemical and Physical Properties
Molecular Weight 358.30 g/mol
Molecular Formula C13H18N4O8
XLogP3-4.5
Hydrogen Bond Donor Count6
Hydrogen Bond Acceptor Count9
Rotatable Bond Count6
Exact Mass358.11246355 g/mol
Monoisotopic Mass358.11246355 g/mol
Topological Polar Surface Area195 Ų
Heavy Atom Count25
Formal Charge0
Complexity621
Isotope Atom Count0
Defined Atom Stereocenter Count5
Undefined Atom Stereocenter Count0
Defined Bond Stereocenter Count0
Undefined Bond Stereocenter Count0
Covalently Bonded Unit Count1
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