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2D Structure
Also known as: 571190-30-2, Pd-0332991, Ibrance, Pd0332991, Pd 0332991, Palbociclib free base
Molecular Formula
C24H29N7O2
Molecular Weight
447.5  g/mol
InChI Key
AHJRHEGDXFFMBM-UHFFFAOYSA-N
FDA UNII
G9ZF61LE7G

Palbociclib is an orally available cyclin-dependent kinase (CDK) inhibitor with potential antineoplastic activity. Palbociclib selectively inhibits cyclin-dependent kinase 4 (CDK4) and 6 (CDK6), thereby inhibiting retinoblastoma (Rb) protein phosphorylation early in the G1 phase leading to cell cycle arrest. This suppresses DNA replication and decreases tumor cell proliferation. CDK4 and 6 are serine/threonine kinases that are upregulated in many tumor cell types and play a key role in the regulation of cell cycle progression.
Palbociclib is a Kinase Inhibitor. The mechanism of action of palbociclib is as a Kinase Inhibitor, and Cytochrome P450 3A Inhibitor.
1 2D Structure

2D Structure

2 Identification
2.1 Computed Descriptors
2.1.1 IUPAC Name
6-acetyl-8-cyclopentyl-5-methyl-2-[(5-piperazin-1-ylpyridin-2-yl)amino]pyrido[2,3-d]pyrimidin-7-one
2.1.2 InChI
InChI=1S/C24H29N7O2/c1-15-19-14-27-24(28-20-8-7-18(13-26-20)30-11-9-25-10-12-30)29-22(19)31(17-5-3-4-6-17)23(33)21(15)16(2)32/h7-8,13-14,17,25H,3-6,9-12H2,1-2H3,(H,26,27,28,29)
2.1.3 InChI Key
AHJRHEGDXFFMBM-UHFFFAOYSA-N
2.1.4 Canonical SMILES
CC1=C(C(=O)N(C2=NC(=NC=C12)NC3=NC=C(C=C3)N4CCNCC4)C5CCCC5)C(=O)C
2.2 Other Identifiers
2.2.1 UNII
G9ZF61LE7G
2.3 Synonyms
2.3.1 MeSH Synonyms

1. 6-acetyl-8-cyclopentyl-5-methyl-2-(5-piperazin-1-ylpyridin-2-ylamino)-8h-pyrido(2,3-d)pyrimidin-7-one

2. Ibrance

3. Pd 0332991

4. Pd-0332991

5. Pd0332991

2.3.2 Depositor-Supplied Synonyms

1. 571190-30-2

2. Pd-0332991

3. Ibrance

4. Pd0332991

5. Pd 0332991

6. Palbociclib Free Base

7. Unii-g9zf61le7g

8. 6-acetyl-8-cyclopentyl-5-methyl-2-((5-(piperazin-1-yl)pyridin-2-yl)amino)pyrido[2,3-d]pyrimidin-7(8h)-one

9. Pd-332991

10. 571190-30-2 (free Base)

11. Mfcd11840850

12. 6-acetyl-8-cyclopentyl-5-methyl-2-[(5-piperazin-1-ylpyridin-2-yl)amino]pyrido[2,3-d]pyrimidin-7(8h)-one

13. 6-acetyl-8-cyclopentyl-5-methyl-2-[[5-(piperazin-1-yl)pyridin-2-yl]amino]-8h-pyrido[2,3-d]pyrimidin-7-one

14. G9zf61le7g

15. Palbociclib(pd0332991)

16. Pd 332991

17. 6-acetyl-8-cyclopentyl-5-methyl-2-(5-piperazin-1-ylpyridin-2-ylamino)-8h-pyrido(2,3-d)pyrimidin-7-one

18. Chebi:85993

19. 6-acetyl-8-cyclopentyl-5-methyl-2-[(5-piperazin-1-ylpyridin-2-yl)amino]pyrido[2,3-d]pyrimidin-7-one

20. Lqq

21. 2euf

22. 6-acetyl-8-cyclopentyl-5-methyl-2-{[5-(piperazin-1-yl)pyridin-2-yl]amino}pyrido[2,3-d]pyrimidin-7(8h)-one

23. Pyrido(2,3-d)pyrimidin-7(8h)-one, 6-acetyl-8-cyclopentyl-5-methyl-2-((5-(1-piperazinyl)-2-pyridinyl)amino)-

24. Palbociclib [usan]

25. 571190-30-2 Pound Not827022-32-2

26. Palbociclib [usan:inn]

27. [d8]-palbociclib

28. 6-acetyl-8-cyclopentyl-5-methyl-2-((5-(piperazin-1-yl)pyridin-2-yl)amino)-8h-pyrido(2,3-d)pyrimidin-7-one

29. Ibrance (tn)

30. Palbociclib- Bio-x

31. Kinome_3823

32. Kinome_3824

33. Palbociclib [mi]

34. 6-acetyl-8-cyclopentyl-5-methyl-2-(5-piperazin-1-yl-pyridin-2-ylamino)-8h-pyrido[2,3-d]pyrimidin-7-one Hydrochloride

35. Palbociclib [inn]

36. Palbociclib [jan]

37. Palbociclib (jan/usan)

38. Palbociclib [who-dd]

39. Schembl462630

40. Bdbm6309

41. Chembl189963

42. Gtpl7380

43. Pd 0332991 (palbociclib)

44. Dtxsid40972590

45. Ex-a408

46. Palbociclib [orange Book]

47. 2euf; Pd 0332991

48. Otava-bb 1115529

49. Bcpp000125

50. Hms3265m09

51. Hms3265m10

52. Hms3265n09

53. Hms3265n10

54. Hms3744g13

55. Amy14886

56. Bcp09274

57. Bcp18381

58. Zinc3938686

59. Nsc758247

60. Nsc772256

61. Nsc800815

62. S4482

63. Akos022205241

64. Bcp9001058

65. Db09073

66. Nsc-758247

67. Nsc-772256

68. Nsc-800815

69. Sb40426

70. Pyrido-[2,3-d]-pyrimidin-7-one 43

71. Ncgc00263129-01

72. Ncgc00263129-08

73. Ncgc00263129-21

74. Ncgc00263129-22

75. Ac-25485

76. As-17016

77. Bp166224

78. Hy-50767

79. Sy026143

80. Ft-0697059

81. A14427

82. D10372

83. 190p302

84. Pd 0332991,pd0332991

85. Pd-0332991, Pd0332991

86. Brd-k51313569-001-01-1

87. P-0332991

88. Q15269707

89. 6-acetyl-8-cyclopentyl-5-methyl-2-((5-(piperazin-1-yl)pyridin-2-yl)amino(pyrido(2,3-d)pyrimidin-7(8h)-one

90. 6-acetyl-8-cyclopentyl-5-methyl-2-(5-piperazin-1-yl-pyridin-2-ylamino)-8h-pyrido[2,3-d]pyrimidin-7-one

91. 6-acetyl-8-cyclopentyl-5-methyl-2-[(5-piperazin-1-ylpyridin-2-yl)amino]pyrido[6,5-d]pyrimidin-7-one

92. 6-acetyl-8-cyclopentyl-5-methyl-2-[[5-(1-piperazinyl)-2-pyridyl]amino]pyrido[2,3-d]pyrimidin-7(8h)-one

93. 6-acetyl-8-cyclopentyl-5-methyl-2-[[5-(piperazin-1-yl)-pyridin-2-yl]amino]-8h-pyrido[2,3-d]pyrimidin-7-one

94. 8-cyclopentyl-6-acetyl-5-methyl-2-{[5-(piperazin-1-yl)pyridin-2-yl]amino}-7h,8h-pyrido[2,3-d]pyrimidin-7-one

2.4 Create Date
2006-01-30
3 Chemical and Physical Properties
Molecular Weight 447.5 g/mol
Molecular Formula C24H29N7O2
XLogP31.8
Hydrogen Bond Donor Count2
Hydrogen Bond Acceptor Count8
Rotatable Bond Count5
Exact Mass447.23827319 g/mol
Monoisotopic Mass447.23827319 g/mol
Topological Polar Surface Area103 Ų
Heavy Atom Count33
Formal Charge0
Complexity775
Isotope Atom Count0
Defined Atom Stereocenter Count0
Undefined Atom Stereocenter Count0
Defined Bond Stereocenter Count0
Undefined Bond Stereocenter Count0
Covalently Bonded Unit Count1
4 Drug and Medication Information
4.1 Drug Indication

Palbociclib is indicated in combination with [letrozole] as initial endocrine-based therapy for the treatment of human epidermal growth factor receptor type 2 (HER2)-negative and hormone receptor(HR)-positive tumors in adult patients with advanced/metastatic breast cancer. It is as well approved in combination with [fulvestrant] in patients with disease progression with prior endocrine therapy. In the official labeling, the use of palbociclib should be accompanied with either an aromatase inhibition, no restricted to letrozole, as initial endocrine-based therapy in postmenopausal women or in man. The breast cancer starts as a group of cancer cells that grow into and destroy the nearby breast tissue. This growth can spread into other parts of the body which is called metastasis. According to the location of the cancer cells, it can be categorized in ductal carcinoma and lobular carcinoma. However, other types of breast cancer include inflammatory breast cancer, Paget disease of the breast, triple negative breast cancer non-Hodgkin lymphoma and soft tissue sarcoma. In males, breast cancer is usually treated as the cases of postmenopausal women and almost all the cases are ductal carcinoma.


FDA Label


Ibrance is indicated for the treatment of hormone receptor (HR) positive, human epidermal growth factor receptor 2 (HER2) negative locally advanced or metastatic breast cancer :

- in combination with an aromatase inhibitor;

- in combination with fulvestrant in women who have received prior endocrine therapy.

In pre- or perimenopausal women, the endocrine therapy should be combined with a luteinizing hormone releasing hormone (LHRH) agonist.


Treatment of breast malignant neoplasms


Treatment of Ewing sarcoma


5 Pharmacology and Biochemistry
5.1 Pharmacology

Due to its mechanism of action, palbociclib inhibits cell growth and suppresses DNA replication in retinoblastoma tumor suppressor gene (RB) proficient cancer cells. As expected, these RB cells present a significant increase in the proportion of cells in G1 state and the presence of palbociclib produces effective dephosphorylation of RB, reduce proliferation and induce senescence causing cell-cycle arrest. In vitro studies showed the potential for palbociclib to reduce cellular proliferation of estrogen receptor-positive breast cancer cell lines through the inhibition of the cell-cycle progression from G1 to S phase. In this study, it was demonstrated that the sensitivity of the cells significantly increased with the expression of _RB1_ and _CCND1_ and low expression of _CDKN2A_. As well, palbociclib, combined with antiestrogens, enhanced _in vivo_ antitumor activity in estrogen receptor-positive breast cancer mouse models. In clinical trials, palbociclib, in combination with letrozole, was shown to significantly increase the progression-free survival (PFS) in patients with metastatic breast cancer without prior endocrine treatment. In the results, the PFS increased from 4.5 to 9.5 months with an overall response rate (ORR) of 24.6%.


5.2 MeSH Pharmacological Classification

Antineoplastic Agents

Substances that inhibit or prevent the proliferation of NEOPLASMS. (See all compounds classified as Antineoplastic Agents.)


Protein Kinase Inhibitors

Agents that inhibit PROTEIN KINASES. (See all compounds classified as Protein Kinase Inhibitors.)


5.3 FDA Pharmacological Classification
5.3.1 Active Moiety
PALBOCICLIB
5.3.2 FDA UNII
G9ZF61LE7G
5.3.3 Pharmacological Classes
Kinase Inhibitor [EPC]; Kinase Inhibitors [MoA]; Cytochrome P450 3A Inhibitors [MoA]
5.4 ATC Code

L01XE33


L - Antineoplastic and immunomodulating agents

L01 - Antineoplastic agents

L01E - Protein kinase inhibitors

L01EF - Cyclin-dependent kinase (cdk) inhibitors

L01EF01 - Palbociclib


5.5 Absorption, Distribution and Excretion

Absorption

Palbociclib presents a linear pharmacokinetic profile and its peak plasma concentration was observed 6-12 hours after oral administration. The oral bioavailability is reported to be of 46% with a steady-state reached after 8 days and a median accumulation ratio of 2.4. The absorption of palbociclib is significantly reduced under fasting conditions and hence, food intake is recommended when this drug is administered.


Route of Elimination

The main route of elimination of palbociclib is through feces after hepatic metabolism while renal clearance seems to play a minor role accounting only for 17.5% of the eliminated dose.


Volume of Distribution

The mean apparent distribution of palbociclib is 2583 L which suggests that palbociclib penetrates extensively into peripheral tissues.


Clearance

The mean apparent oral clearance of palbociclib is of 63.1 L/h.


5.6 Metabolism/Metabolites

Palbociclib is mainly hepatically transformed. the metabolism is mainly performed by the activities of the cytochrome P450 isoenzyme 3A and the sulfotransferase 2A1. The metabolism of palbociclib is represented mainly by reactions of oxidation and sulfonation followed by acylation and glucuronidation as minor reactions. After its metabolism, palbociclib forms mainly inactive glucuronide and sulfamic acid conjugates. The major circulating metabolite, accounting for 1.5% of the dose in excreta is is the glucuronide conjugate.


5.7 Biological Half-Life

The mean plasma elimination half-life of palbociclib is 29 hours.


5.8 Mechanism of Action

Palbociclib is a cyclin-dependent kinase 4/6 (CDK4/6) inhibitor that acts by binding to the ATP pocket with an IC50 in the range of 9-15 nmol/L. It is important to consider that it presents low to absent activity against other kinases. The CDK4/6 kinase is involved, with coregulatory partner cyclin D, in the G1-S transition. Hence, inhibition of this step prevents cell cycle progression in cells in whose this pathway is functioning. This step includes the pathways of the phosphorylation of retinoblastoma protein and the E2F family of transcription factors.