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Technical details about Sapacitabine, learn more about the structure, uses, toxicity, action, side effects and more

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2D Structure
Also known as: 151823-14-2, Cs-682, Cyc682, Cyc-682, Cs682, Cs 682
Molecular Formula
C26H42N4O5
Molecular Weight
490.6  g/mol
InChI Key
LBGFKUUHOPIEMA-PEARBKPGSA-N
FDA UNII
W335P73C3L

Sapacitabine is an orally bioavailable pyrimidine analogue prodrug with potential antineoplastic activity. Sapacitabine is hydrolyzed by amidases to the deoxycytosine analogue CNDAC (2'-Cyano-2'-deoxyarabinofuranosylcytosine), which is then phosphorylated into the active triphosphate form. As an analogue of deoxycytidine triphosphate, CNDAC triphosphate incorporates into DNA strands during replication, resulting in single-stranded DNA breaks during polymerization due to beta-elimination during the fidelity checkpoint process; cell cycle arrest in the G2 phase and apoptosis ensue. The unmetabolized prodrug may exhibit antineoplastic activity as well.
1 2D Structure

2D Structure

2 Identification
2.1 Computed Descriptors
2.1.1 IUPAC Name
N-[1-[(2R,3S,4S,5R)-3-cyano-4-hydroxy-5-(hydroxymethyl)oxolan-2-yl]-2-oxopyrimidin-4-yl]hexadecanamide
2.1.2 InChI
InChI=1S/C26H42N4O5/c1-2-3-4-5-6-7-8-9-10-11-12-13-14-15-23(32)28-22-16-17-30(26(34)29-22)25-20(18-27)24(33)21(19-31)35-25/h16-17,20-21,24-25,31,33H,2-15,19H2,1H3,(H,28,29,32,34)/t20-,21+,24-,25+/m0/s1
2.1.3 InChI Key
LBGFKUUHOPIEMA-PEARBKPGSA-N
2.1.4 Canonical SMILES
CCCCCCCCCCCCCCCC(=O)NC1=NC(=O)N(C=C1)C2C(C(C(O2)CO)O)C#N
2.1.5 Isomeric SMILES
CCCCCCCCCCCCCCCC(=O)NC1=NC(=O)N(C=C1)[C@H]2[C@H]([C@@H]([C@H](O2)CO)O)C#N
2.2 Other Identifiers
2.2.1 UNII
W335P73C3L
2.3 Synonyms
2.3.1 MeSH Synonyms

1. 2'-c-cyano-2'-deoxy-1-arabinofuranosyl-n(4)-palmitoylcytosine

2. Cndac Cpd

3. Cs-682

4. Cyc 682

5. Cyc-682

2.3.2 Depositor-Supplied Synonyms

1. 151823-14-2

2. Cs-682

3. Cyc682

4. Cyc-682

5. Cs682

6. Cs 682

7. Pcndac

8. Cyc 682

9. W335p73c3l

10. N-(1-(2-cyano-2-deoxy-beta-d-arabinofuranosyl)-1,2-dihydro-2-oxo-4-pyrimidinyl)hexadecanamide

11. N-(1-((2r,3s,4s,5r)-3-cyano-4-hydroxy-5-(hydroxymethyl)tetrahydrofuran-2-yl)-2-oxo-1,2-dihydropyrimidin-4-yl)palmitamide

12. Sapacitabine [usan:inn]

13. Sapacitabina

14. Sapacitabinum

15. Unii-w335p73c3l

16. Sapacitabine (cyc682)

17. Sapacitabine (usan/inn)

18. Sapacitabine [inn]

19. Sapacitabine [usan]

20. Sapacitabine [mart.]

21. N-[1-[(2r,3s,4s,5r)-3-cyano-4-hydroxy-5-(hydroxymethyl)oxolan-2-yl]-2-oxopyrimidin-4-yl]hexadecanamide

22. Sapacitabine [who-dd]

23. Schembl711854

24. Chembl2105681

25. Dtxsid90164887

26. Chebi:145429

27. Ex-a1617

28. Nsc791785

29. Zinc14263648

30. Db06365

31. Nsc-791785

32. Ac-36130

33. Hexadecanamide, N-(1-(2-cyano-2-deoxy-beta-d-arabinofuranosyl)-1,2-dihydro-2-oxo-4-pyrimidinyl)-

34. Hy-16445

35. Cs-0006340

36. D09722

37. 823s142

38. Q7420893

39. 2'-c-cyano-2'-deoxy-1-arabinofuranosyl-n(4)-palmitoylcytosine

40. 1-(2-cyano-2-deoxy-beta-d-arabinofuranosyl)-4-(hexadecanoylamino)pyrimidin-2(1h)-one

41. Hexadecanamide, N-(1-(2-cyano-2-deoxy-.beta.-d-arabinofuranosyl)-1,2-dihydro-2-oxo-4- Pyrimidinyl)-

42. N-(1-(2-cyano-2-deoxy-.beta.-d-arabinofuranosyl)-2-oxo-1,2-dihydropyrimidin-4- Yl)hexadecanamide

43. N-[1-(2-cyano-2-deoxy-beta-d-arabinofuranosyl)-2-oxo-1,2-dihydropyrimidine-4-yl]hexadecanamide

2.4 Create Date
2005-08-08
3 Chemical and Physical Properties
Molecular Weight 490.6 g/mol
Molecular Formula C26H42N4O5
XLogP35.2
Hydrogen Bond Donor Count3
Hydrogen Bond Acceptor Count6
Rotatable Bond Count17
Exact Mass490.31552045 g/mol
Monoisotopic Mass490.31552045 g/mol
Topological Polar Surface Area135 Ų
Heavy Atom Count35
Formal Charge0
Complexity775
Isotope Atom Count0
Defined Atom Stereocenter Count4
Undefined Atom Stereocenter Count0
Defined Bond Stereocenter Count0
Undefined Bond Stereocenter Count0
Covalently Bonded Unit Count1
4 Drug and Medication Information
4.1 Drug Indication

Investigated for use/treatment in solid tumors, cutaneous t-cell lymphoma, myelodysplastic syndrome, and leukemia (lymphoid).


5 Pharmacology and Biochemistry
5.1 MeSH Pharmacological Classification

Antineoplastic Agents

Substances that inhibit or prevent the proliferation of NEOPLASMS. (See all compounds classified as Antineoplastic Agents.)


5.2 Mechanism of Action

Sapacitabine appears to act through a dual mechanism. It interferes with DNA synthesis by causing single-strand DNA breaks and also induces arrest of cell cycle progression mainly at G2/M-Phase. Both sapacitabine and CNDAC, its major metabolite or a substance into which the drugs converts after ingestion by patients, have demonstrated potent anti-tumor activity in preclinical studies.